Pokémon Adventures: X•Y

This chapter follows the adventures of Blake, a member of the International Police. He searches for members of the villainous group Team Plasma that was defeated in the Black & White chapter. Elsewhere is Whitley, a former member of Team Plasma who has gone in hiding in Aspertia City after the team's defeat in the Black & White chapter.

(Source: Bulbapedia)

Peace may have been restored to Hoenn after the evils schemes of Team Aqua, Team Magma and later Guile Hideout were put to rest. However, when a new crisis approached, Steve Stone had no choice but to enlist the help of Ruby, Sapphire and Emerald once again.

The manga follows the adventures of a Pokémon Trainer, Akira, and his Charizard.

Red is just a normal kid living in the rural Pallet Town, when he decides to go out on his own adventure, along with his rival since childhood, Green. In this world of Pokemon, he makes many friends, humans and Pokemon alike. However, all is not well. Team Rocket is trying to capture Mew, a very rare Pokemon, and is performing experiments on other Pokemon, trying to increase their power. Red and his friends must battle against Team Rocket to stop their cruel experiments and unlock the secrets of Pokemon.